Alex X Lu

Latest

• A functional map of the human intrinsically disordered proteome
• MorphoHELM: A Comprehensive Benchmark for Evaluating Representations for Microscopy-Based Morphology Assays
• Phonological Perception of Sign Language Models
• Vermeer: Autoregressive generative modeling of microscopy predicts protein localization
• Underrepresentation of children in public medical imaging datasets
• scGeneScope: A Treatment-Matched Single Cell Imaging and Transcriptomics Dataset and Benchmark for Treatment Response Modeling
• Enhancing AI and Dynamical Subseasonal Forecasts with Probabilistic Bias Correction
• Evolutionary conditioning enables guided generation of functionally diverse enhancers
• Multimodal Alignment Improves Generalizability of Genomic Biomarker Prediction in Computational Pathology
• Exploring Reduced Feature Sets for American Sign Language Dictionaries
• Investigating Dictionary Expansion for Video-based Sign Language Dictionaries
• Exploring Collaboration to Center the Deaf Community in Sign Language AI
• Representation Learning Methods for Single-Cell Microscopy are Confounded by Background Cells
• Zero-shot evaluation reveals limitations of single-cell foundation models
• Integrating chemical structures as treatments improves representations of microscopy images for morphological profiling
• ASL STEM Wiki: Dataset and Benchmark for Interpreting STEM Articles
• Systemic Biases in Sign Language AI Research: A Deaf-Led Call to Reevaluate Research Agendas
• Convolutions are competitive with transformers for protein sequence pretraining
• Protein structure generation via folding diffusion
• Feature reuse and scaling: Understanding transfer learning with protein language models
• Domain adaptation using optimal transport for invariant learning using histopathology datasets
• Incorporating knowledge of plates in batch normalization improves generalization of deep learning for microscopy images
• Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning
• CytoImageNet: A large-scale pretraining dataset for bioimage transfer learning
• Improved Conditional Flow Models for Molecule to Image Synthesis
• Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning
• The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers
• YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells
• Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting
• Integrating images from multiple microscopy screens reveals diverse patterns of change in the subcellular localization of proteins
• Influence of repetitive mechanical loading on MMP2 activity in tendon fibroblasts
• An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images
• Angiopoietin‐like 4 promotes angiogenesis in the tendon and is increased in cyclically loaded tendon fibroblasts
• Accumulation of oxidized LDL in the tendon tissues of C57BL/6 or apolipoprotein E knock-out mice that consume a high fat diet: potential impact on tendon health
• Enhanced collagen type I synthesis by human tenocytes subjected to periodic in vitro mechanical stimulation
• Podocalyxin Regulates Murine Lung Vascular Permeability by Altering Endothelial Cell Adhesion